#!/usr/bin/perl
# Program to generate Random DNA set: 
use strict;
use warnings;
print"\n\n Enter No. of DNA Molecules required: ";# Line 5 
my $number= <STDIN>;
print"\n Enter Maximum length of DNA (bases): ";
my $maxl= <STDIN>;
print"\n Enter Minimum length of DNA (bases): ";
  my $minl= <STDIN>; # Line 10        
# An array initialized to the empty list, to store the DNA in:
  my @random_DNA= ();
  srand(time|$$);
# Call the subroutine to do the real job:
 @random_DNA=make_random_DNA_set($minl,$maxl,$number);
# print the results, one per line: Line 16 
print"\n The DNA set containing $number DNA molecules, varying in length from $minl to $maxl bases, are:\n\n";
 my $dna=();
 foreach my $dna (@random_DNA) { # Line 19 
   print"$dna\n";}  
 print"\n";# one per line Line 21
my $output="RandDNA .txt";
unless (open(RESULT,">my $output")){
print"Cannot open file\"my $output\".\n\n";
exit;
}  # Line 26  
print RESULT"\n Randomly Generated dna:\n
 The DNA set containing $number molecules varying in length from $minl to $maxl bases are:\n\n
 my $dna\n";
close(RESULT);# Line 30   
exit;
# Line 32 Subroutines (five):    
# Calling the subroutine make_random_DNA_set: # Line 33 
sub make_random_DNA_set {
 # Collect arguments, declare variables 
 my ($minl,$maxl,$number)=@_;
 # Length of each DNA fragment   # Line 37 
 my $length;
 # DNA fragment:  
 my $dna;                        # Line 40
 # Set of DNA fragments 
 my @set;                        
 # Create set of random DNA:  
  for (my $i=0;$i<$number;++$i) {
 # find a random length between min & max Line 45:  
  $length= randomlength ($minl,$maxl);
 # add $dna fragment to @set Line 47:  
  push (@set,$dna);}
  return @set;}  # Line 49     
# Write the Subroutine randomlength:
 sub randomlength {
 # Collect arguments, declare variables Line 52: 
 my ($minl,$maxl)=@_;
 # Get the random number in correct interval:
 return (int(rand($maxl-$minl+1))+$minl);}
# Now write the subroutine make_random_DNA:
sub make_random_DNA {                      # Line 57      
 # Collect arguments, declare variables:
 my ($length)=@_;                          # Line 59  
 my $dna;
 for (my $i=0;$i<$length;++$i) {
 $dna.=randomnucleotide();}                # Line 62   
 return $dna;} 
# Now write the subroutine randomnucleotide Line 64:  
sub randomnucleotide {
 my (@nucleotides)=('A','T','G','C');
 return randomelement(@nucleotides); # Line 67  
# Now write the subroutine randomelement:
 sub randomelement {
 my(@array)=@_;
 return $array[rand @array];}  # Line 71  
}