$new_guy has asked for the wisdom of the Perl Monks concerning the following question:
Dear Monks,
I have been using a script that you helped develop:
http://perlmonks.org/index.pl?node_id=864169The script has been brilliant. However, I am faced with a new task. The script has been counting all the rows that have all columns with exactly the same characters in my data. The data file is here:
http://perlmonks.org/index.pl?abspart=1;displaytype=displaycode;node_id=864179;part=4This was done in a random fashion using the file:
http://perlmonks.orgindex.pl?abspart=1;displaytype=displaycode;node_id=864179;part=3How do I modify the script to count the row only once once it has counted a previous row with the same integer/number in that appears infront of my row characters (that is the z's)?
The script I am using current is below. It takes the random file as: "random.txt" and the data file as "re-organized.txt"
jgg.pl
#!/usr/bin/perl # use strict; use warnings; use 5.010; ##you will print results but first remove any previous files my $cgs = "cg_size.txt"; if (unlink($cgs) == 1) { print "Existing \"cg_size.txt\" file was removed\n"; } #now make a file for the core genome sizes output my $output_cgs = "cg_size.txt"; if (! open(CGS, ">>$output_cgs") ) { print "Cannot open file \"$output_cgs\" to write + to!!\n\n"; exit; } my @tests = do { my $randomFile = q{random.txt}; open my $randomFH, q{<}, $randomFile or die qq{open: < $randomFile: $!\n}; map [ split ], <$randomFH>; }; my $columnFile = q{re-organized.txt}; open my $columnFH, q{<}, $columnFile or die qq{open: < $columnFile: $!\n}; my @results; while ( <$columnFH> ) { my @cols = split; foreach my $idx ( 0 .. $#tests ) { foreach my $subidx ( 0 .. $#{ $tests[ $idx ] } ) { my @posns = split m{,}, $tests[ $idx ]->[ $subidx ]; $results[ $idx ]->[ $subidx ] ++ if scalar @posns == grep { q{z} eq $cols[ $_ ] } @posns; } } } close $columnFH or die qq{close: < $columnFile: $!\n}; say CGS qq{@$_} for @results;
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Replies are listed 'Best First'. | |
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Re: Count similar characters in a row - only once
by Anonymous Monk on Jun 28, 2011 at 10:33 UTC | |
by $new_guy (Acolyte) on Jun 28, 2011 at 13:14 UTC | |
by Anonymous Monk on Jun 28, 2011 at 14:06 UTC | |
by $new_guy (Acolyte) on Jun 29, 2011 at 10:47 UTC | |
by Anonymous Monk on Jun 29, 2011 at 13:11 UTC |
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