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Re^2: Memory issue with cancer data (analogy)

by ZWcarp (Beadle)
on Jul 25, 2013 at 20:17 UTC ( #1046416=note: print w/replies, xml ) Need Help??

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  1. or download this
    Gene Name    Patient ID    Patient Diagnosis    Ammino Acid Mutation a
    +nd Sit    Protein Length 
    AAK1    19679    adenocarcinoma    L661I    21265
    AAK1    19679    adenocarcinoma    L664T    21265
    ...
    TET3    587220    adenocarcinoma    R1534Q    10982
    TET3    587256    adenocarcinoma    G1356R    10982
    TET3    587338    adenocarcinoma    G1356W    10982
    
  2. or download this
    1-Largest Gene Length    AA site -1    AA site -2    AA site -3    4……
    +……16    AA site -17    18…..51etc    AA site 52    AA site 64    65…4
    +00    AA site 401    402….660    AA site 661    AA site 664    AA sit
    +e 935    AA site 1356    AA site 1534
    AAK1    0    0    0    0    0    0    0    2        0        1    2   
    + 0    0    0
    FKT1    0    0    0    0    4    0    1    0        0        0    0   
    + 0    0    0
    TET3    0    0    0    0    0    0    0    0        1        0    0   
    + 1    2    1
    

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[kcott]: marioroy, not much to go on. Searching "slow logging" (by me) produces no results; just "slow" gives a screenful. Perhaps, "Searching large files a block at a time" which had a performance aspect and you had some imput also.
[gnosti]: Hi, Looking for a module that can add HH:MM:SS durations like 1:40, 1:00:24.13 and 12.3? I see on CPAN more modules with absolute dates. TIA
[kcott]: s/imput/input/
[Corion]: DateTime::Duration ? Personally,I convert stuff to seconds using Time::Piece or Time::Local and then add the seconds and then use POSIX::strftime to print them as hours again
[marto]: good morning all, TCIF
[gnosti]: I'm reading from ffmpeg lengths of video clips in H:M:S and needing to add them and format them back to H:M:S for feeding back to ffmpeg
[marioroy]: kcott Thanks

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