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Re^3: intron length

by marto (Bishop)
on Feb 27, 2013 at 10:47 UTC ( #1020843=note: print w/replies, xml ) Need Help??

in reply to Re^2: intron length
in thread intron length

"But I want add script which will calculate intron length, which is "intron length = full length - exon length". Exon length = Transcription length."

Your code makes no mention of intron, exon or transcription. FASTA_format makes no mention of these eiter. I, like most people am not a bioinformatician. You're either going to have to describe your problem better (see links I previously gave which describe this in detail, direct link) or wait for someone who is familiar with terms you're using who is willing to help.

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[LanX]: my main problem will be to cnvince my colleagues that our productive code is broken oO ... so in the end I will just make a workaround :-/
LanX hates UTF8 for causing knots in his brain and stomach
[Corion]: LanX: Yes, that's the main problem - you have lots (and lots) of workarounds in various places and stages of the processing, and to clean that mess up requires action across the complete codebase. And it's almost impossible to do it piece-by-piece

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