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Re: How To Parse a BLAST data fileby bioinformatics (Friar) |
| on Apr 29, 2013 at 15:59 UTC ( [id://1031250]=note: print w/replies, xml ) | Need Help?? |
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This is where I would recommend using bioperl. You can find the modules here: http://bioperl.org/wiki/Main_Page. Specific examples for parsing blast searches are here: http://bioperl.org/wiki/HOWTO:SearchIO#Using_SearchIO. If you don't have administrative permissions on the machine you are using, you can clone the git repository and export the location to $PERL5LIB.
Bioinformatics
In Section
Seekers of Perl Wisdom
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