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Re^4: Reverse Complement

by stamp1982 (Novice)
on Jun 30, 2013 at 22:39 UTC ( #1041665=note: print w/replies, xml ) Need Help??


in reply to Re^3: Reverse Complement
in thread Reverse Complement

Can you please explain this in your comment?

and with the sample input you want, e.g.: perl -wMstrict -l your_file.pl GGGGaaaaaaCatttatatat atatataaatttttATtcccc

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Re^5: Reverse Complement
by AnomalousMonk (Chancellor) on Jun 30, 2013 at 23:00 UTC

    The command line invocation example
        perl -wMstrict -l  your_file.pl  GGGGaaaaaaCatttatatat  atatataaatttttATtcccc
    was intended to show how to invoke a source code file (prepared as described in previous replies) and followed by two sequence strings  GGGGaaaaaaCatttatatat and  atatataaatttttATtcccc to be compared for reverse-complementarity. (BTW: I've tried this exact command line and it works.)

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[Corion]: Hmm. I think overnight I decided on simplifying some code. I have plugin classes that do data import (.csv, .yml, .json) and for that create objects on which then ->load() is called. But YAML::XS doesn't have an object, so I wrote my own wrapper.
[Corion]: This evening, I'll kill that wrapper again, and just call LoadFile() in the plugin class directly instead of creating a go-between object for no real gain.
[Corion]: Writing these import plugins was really nice though - in about 2 hours, I had imports for CSV, YAML and JSON, and adding XLS(X), SQLite (or DBI) data sources is also trivial. I'm idly wondering about separating the plugin into transport+parser, so ...
[Corion]: ... http:// URLs could be retrieved and then parsed, but I think that that would be overkill for a toy static site generator ;)

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