|Pathologically Eclectic Rubbish Lister|
Re: Finding Overlapping Regions on Genomeby mtmcc (Hermit)
|on Jul 11, 2013 at 11:47 UTC||Need Help??|
If I understand what you want correctly, this (not very elegant) script should work (provided your values are in ascending order of contig start site (column 3)):
If the chromosome changes during your large file, it would need to be modified to account for that.
There's probably a much prettier way of doing it though...Michael