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Re: Listing occurence of all residues

by Anonymous Monk
on Mar 01, 2015 at 13:23 UTC ( [id://1118269]=note: print w/replies, xml ) Need Help??


in reply to Listing occurence of all residues

Welcome! Please see How do I post a question effectively? and kindly provide some short but representative sample input data along with the expected output for that sample input (both formatted inside <code> tags), with which one can reproduce the problem.

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Re^2: Listing occurence of all residues
by sreya (Initiate) on Mar 01, 2015 at 14:50 UTC

    Thank you. I have updated the question.I think it is more clear now.

      Hi sreya, could you attach a sample 'e.txt'?
        Here is a sample file. I have used shebang line and declarations of varibles.But since I am posing the question to experts I just avoided them. Thank you for considering my question.

        >sp|P05100|3MG1_ECOLI DNA-3-methyladenine glycosylase 1

        MERCGWVSQDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACF

        HQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFVDFVWSUV

        >sp|P30871|3PASE_ECOLI Inorganic triphosphatase

        MAQEIELKFIVNHSAVEALRDHLNTLGGEHHDPVQLLNIYYETPDNWLRGHDMGLRI

        RGE NGRYEMTMKVAGRVTGGLHQRPEYNVALSEPTLDLAQLPTEVWPNGELPADLASRVQPLF

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