My apologies for being so slow. At the moment this is what I have.
perl -wMstrict -l your_file.pl GGGGaaaaaaCatttatatat atatataaattttt
+ATtcccc
die "Please enter two sequences as arguments on the command line\n"
unless @ARGV == 2;
my ($orig, $comp) = map { uc } @ARGV;
die "Please enter only ATCG sequences\n" if grep { /[^ATCG]/ } $orig,
+$comp;
die "Sorry, the two sequences you have just entered are of different l
+engths."
. "\nPlease try again on the command line.\n"
if length $orig != length $comp;
# $comp will transform back to $orig iff it is the reverse complement
$comp =~ y/ATCG/TAGC/;
if ($orig eq reverse $comp) {
print "Yes, the two sequences are reverse-complement of each other
+.\n";
exit;
} else {
die "Unfortunately, the two sequences are not reverse-complement.\
+n";
}
comments I get are : unquoted strings may clash with future reserved words and compilation error and syntax error at wMstrict -l
-
Are you posting in the right place? Check out Where do I post X? to know for sure.
-
Posts may use any of the Perl Monks Approved HTML tags. Currently these include the following:
<code> <a> <b> <big>
<blockquote> <br /> <dd>
<dl> <dt> <em> <font>
<h1> <h2> <h3> <h4>
<h5> <h6> <hr /> <i>
<li> <nbsp> <ol> <p>
<small> <strike> <strong>
<sub> <sup> <table>
<td> <th> <tr> <tt>
<u> <ul>
-
Snippets of code should be wrapped in
<code> tags not
<pre> tags. In fact, <pre>
tags should generally be avoided. If they must
be used, extreme care should be
taken to ensure that their contents do not
have long lines (<70 chars), in order to prevent
horizontal scrolling (and possible janitor
intervention).
-
Want more info? How to link
or How to display code and escape characters
are good places to start.
|