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I think this does what you describe.

#! perl -slw use strict; my( $target_name, %probes ); $_ = <DATA>; # Prime the pump. do { # extract the target name $target_name = $1 if m[( \d{7} ) _at: \d{3} : \d{3} ]x; while( m[$target_name] ) { # process the record containing the current target name my $probe = <DATA>; # Read the probe chomp $probe; # save it in an HoA keyed by the target name push @{ $probes{ $target_name } }, $probe; last unless defined( $_ = <DATA> ); # get the next line; } } until eof DATA; # till done print $_, ' : ', join', ', @{ $probes{ $_ } } for keys %probes; __DATA__ probe:MOE430A:1415670_at:549:177; Interrogation_Position=2513; Antisen +se; GAGGAAACGTTCACCCTGTCTACTA probe:MOE430A:1415670_at:467:433; Interrogation_Position=2521; Antisen +se; GTTCACCCTGTCTACTATCAAGACA probe:MOE430A:1415670_at:254:643; Interrogation_Position=2533; Antisen +se; TACTATCAAGACACTCGAAGAGGCT probe:MOE430A:1415670_at:54:269; Interrogation_Position=2556; Antisens +e; CTGTGGGCAATATTGTGAAGTTCCT probe:MOE430A:1415670_at:405:339; Interrogation_Position=2583; Antisen +se; GAATGCATCCTTGTGAGAGGTCAGA probe:MOE430A:1415670_at:60:395; Interrogation_Position=2597; Antisens +e; GAGAGGTCAGACAAAGTGCCAGAAA probe:MOE430A:1415670_at:284:165; Interrogation_Position=2619; Antisen +se; AAAACAAGAACACCCACACGCTGCT probe:MOE430A:1415670_at:622:145; Interrogation_Position=2634; Antisen +se; ACACGCTGCTGCTAGCTGGAGTATT probe:MOE430A:1415670_at:291:661; Interrogation_Position=2804; Antisen +se; TATCTTGTCCAACACTACGTCGAAG probe:MOE430A:1415670_at:146:701; Interrogation_Position=2956; Antisen +se; TTGTCACCATGCCTGCAAGGAGAGA probe:MOE430A:1415671_at:116:525; Interrogation_Position=1156; Antisen +se; GGAACAGGAATGTCGCAACATCGTA probe:MOE430A:1415671_at:655:137; Interrogation_Position=1173; Antisen +se; ACATCGTATGGATTGCTGAGTGCAT probe:MOE430A:1415671_at:398:139; Interrogation_Position=1232; Antisen +se; GGCTGATCACATCCAAAAAGTCATG

Output

P:\test>285872 1415671 : GGAACAGGAATGTCGCAACATCGTA, ACATCGTATGGATTGCTGAGTGCAT, GGCTGA +TCACATCCAAAAAGTCATG 1415670 : GAGGAAACGTTCACCCTGTCTACTA, GTTCACCCTGTCTACTATCAAGACA, TACTAT +CAAGACACTCGAAGAGGCT, CTGTGGGCAATATTGTGAAGTTCCT, GAATGCATCCTTGTGAGAGGT +CAGA, GAGAGGTCAGACAAAGTGCCAGAAA, AAAACAAGAACACCCACACGCTGCT, ACACGCTGC +TGCTAGCTGGAGTATT, TATCTTGTCCAACACTACGTCGAAG, TTGTCACCATGCCTGCAAGGAGAG +A

Examine what is said, not who speaks.
"Efficiency is intelligent laziness." -David Dunham
"When I'm working on a problem, I never think about beauty. I think only how to solve the problem. But when I have finished, if the solution is not beautiful, I know it is wrong." -Richard Buckminster Fuller
If I understand your problem, I can solve it! Of course, the same can be said for you.


In reply to Re: Little pattern problem... by BrowserUk
in thread Little pattern problem... by bioinformatics

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