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Ehm.. I'm not a biologist, I only know someone... so you almost lost me there. The BLAST and related algorithms do exactly what you asked for: they find all the possible matches between two sequences, ranking them by 'edit distance', i.e. the number of operations needed to obtain a perfect match. This is really all I know, for details ask an expert ;-) -- dakkar - Mobilis in mobile Most of my code is tested... In reply to Re^3: similar string matching
by dakkar
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