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Re^2: Challenge: Fast Common Substrings

by BrowserUk (Pope)
on Apr 05, 2007 at 15:34 UTC ( #608501=note: print w/ replies, xml ) Need Help??


in reply to Re: Challenge: Fast Common Substrings
in thread Challenge: Fast Common Substrings

The same benchmark as above but excluding the two slowest/erroneous algorithms, allows me to run 1000 strings looking for common substrings of lengths 2 .. 6 and get more digestable results:

c:\test>608174-b -N=1000 -LENGTH=2 Rate BH2 BH1 MN L~R Buk BH2 2.57/s -- -8% -52% -73% -86% BH1 2.81/s 9% -- -48% -70% -85% MN 5.41/s 110% 93% -- -43% -71% L~R 9.46/s 268% 237% 75% -- -50% Buk 18.9/s 635% 574% 249% 100% -- ---- BH2 => 14 L~R => 14 Buk => 14 BH1 => 14 MN => 14 c:\test>608174-b -N=1000 -LENGTH=3 Rate BH1 MN BH2 L~R Buk BH1 2.51/s -- -28% -54% -69% -81% MN 3.50/s 40% -- -36% -57% -73% BH2 5.47/s 118% 56% -- -33% -58% L~R 8.20/s 227% 134% 50% -- -38% Buk 13.2/s 425% 276% 141% 61% -- ---- BH2 => 10 L~R => 10 Buk => 10 BH1 => 10 MN => 10 c:\test>608174-b -N=1000 -LENGTH=4 Rate BH1 MN L~R BH2 Buk BH1 2.35/s -- -23% -70% -73% -80% MN 3.05/s 30% -- -62% -64% -75% L~R 7.92/s 237% 160% -- -8% -34% BH2 8.58/s 265% 182% 8% -- -28% Buk 12.0/s 410% 293% 51% 40% -- ---- BH2 => 6 L~R => 6 Buk => 6 BH1 => 6 MN => 6 c:\test>608174-b -N=1000 -LENGTH=5 Rate BH1 MN L~R BH2 Buk BH1 2.38/s -- -20% -71% -77% -80% MN 2.98/s 25% -- -64% -71% -75% L~R 8.25/s 246% 177% -- -21% -32% BH2 10.4/s 337% 249% 26% -- -14% Buk 12.1/s 408% 307% 47% 16% -- ---- BH2 => 1 L~R => 1 Buk => 1 BH1 => 1 MN => 1 c:\test>608174-b -N=1000 -LENGTH=6 Rate BH1 MN L~R BH2 Buk BH1 2.45/s -- -19% -70% -78% -80% MN 3.02/s 23% -- -64% -73% -76% L~R 8.29/s 238% 175% -- -26% -34% BH2 11.2/s 358% 272% 35% -- -10% Buk 12.5/s 410% 314% 51% 11% -- ---- BH2 => 0 L~R => 0 Buk => 0 BH1 => 0 MN => 0

Examine what is said, not who speaks -- Silence betokens consent -- Love the truth but pardon error.
"Science is about questioning the status quo. Questioning authority".
In the absence of evidence, opinion is indistinguishable from prejudice.


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Re^3: Challenge: Fast Common Substrings
by eric256 (Parson) on Apr 06, 2007 at 20:14 UTC

    /me benchmarks agian with his in there as a matter of pride.

    C:\Perl\test>substr_bench.pl -N=1000 -LENGTH=2 Rate BH2 BH1 MN Eric L~R Buk BH2 3.37/s -- -20% -53% -70% -78% -87% BH1 4.21/s 25% -- -42% -62% -72% -84% MN 7.22/s 114% 71% -- -35% -52% -73% Eric 11.1/s 231% 164% 54% -- -26% -58% L~R 15.1/s 347% 258% 109% 35% -- -44% Buk 26.7/s 694% 534% 270% 140% 77% -- ---- BH2 => 14 L~R => 12 Eric => 14 Buk => 14 BH1 => 14 MN => 14 C:\Perl\test>substr_bench.pl -N=1000 -LENGTH=3 Rate BH1 MN BH2 Eric L~R Buk BH1 3.88/s -- -23% -39% -46% -73% -80% MN 5.05/s 30% -- -21% -30% -65% -74% BH2 6.40/s 65% 27% -- -11% -56% -67% Eric 7.21/s 86% 43% 13% -- -50% -63% L~R 14.4/s 272% 185% 125% 100% -- -26% Buk 19.4/s 400% 284% 203% 169% 35% -- ---- BH2 => 9 L~R => 9 Eric => 9 Buk => 9 BH1 => 9 MN => 9 C:\Perl\test>substr_bench.pl -N=1000 -LENGTH=4 Rate BH1 MN Eric BH2 L~R Buk BH1 3.56/s -- -19% -43% -57% -74% -79% MN 4.39/s 23% -- -30% -47% -68% -74% Eric 6.22/s 75% 42% -- -25% -54% -63% BH2 8.35/s 135% 90% 34% -- -38% -51% L~R 13.5/s 281% 209% 118% 62% -- -20% Buk 16.9/s 375% 285% 171% 102% 25% -- ---- BH2 => 4 L~R => 4 Eric => 4 Buk => 4 BH1 => 4 MN => 4 C:\Perl\test>substr_bench.pl -N=1000 -LENGTH=5 Rate BH1 MN Eric BH2 L~R Buk BH1 3.82/s -- -14% -34% -59% -72% -78% MN 4.44/s 16% -- -24% -52% -67% -74% Eric 5.82/s 52% 31% -- -37% -57% -66% BH2 9.27/s 143% 109% 59% -- -32% -46% L~R 13.6/s 255% 205% 133% 46% -- -21% Buk 17.1/s 348% 285% 194% 85% 26% -- ---- BH2 => 0 L~R => 0 Eric => 0 Buk => 0 BH1 => 0 MN => 0 C:\Perl\test>substr_bench.pl -N=1000 -LENGTH=6 (warning: too few iterations for a reliable count) Rate BH1 MN Eric BH2 L~R Buk BH1 3.56/s -- -21% -38% -64% -73% -80% MN 4.50/s 27% -- -21% -54% -66% -74% Eric 5.73/s 61% 27% -- -42% -57% -67% BH2 9.84/s 177% 119% 72% -- -25% -43% L~R 13.2/s 271% 193% 130% 34% -- -24% Buk 17.4/s 389% 286% 203% 77% 32% -- ---- BH2 => 1 L~R => 1 Eric => 1 Buk => 1 BH1 => 1 MN => 1

    ___________
    Eric Hodges

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