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Re: Reading in Qual File Using Bio::SeqIO

by chuckbutler (Priest)
on Jul 01, 2010 at 20:15 UTC ( #847608=note: print w/ replies, xml ) Need Help??


in reply to Reading in Qual File Using Bio::SeqIO

May I ask, what is the value of $qual_file?

Good luck. -c


Comment on Re: Reading in Qual File Using Bio::SeqIO
Re^2: Reading in Qual File Using Bio::SeqIO
by twaddlac (Novice) on Jul 01, 2010 at 20:36 UTC

    Ah, forgive me. That is just the file name of the actual data, stored in a text editor. However, I did find something interesting about the qual file that is being read in. When not specifying the format of the file being streamed in, the parser identified it as fasta and not qual. This file type seems to be qual, but I'm not certain. Hopefully that helps!


    Thank you!

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