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Re^4: phylogenetic tree construction using perl

by zing (Beadle)
on Sep 30, 2012 at 20:38 UTC ( #996538=note: print w/replies, xml ) Need Help??


in reply to Re^3: phylogenetic tree construction using perl
in thread phylogenetic tree construction using perl

Hi jgamble, Did you get the algorithm. Please help me on it. http://picpaste.com/Z1SVFTT6.png

This is what a triplet looks like. The link below shows three triplets (a,b|c) (a,c|d) (d,e|b) and their consensus supertree. http://picpaste.com/Nu0ON9uo.jpg

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Re^5: phylogenetic tree construction using perl
by jgamble (Pilgrim) on Oct 02, 2012 at 14:23 UTC

    I'm only able to look at the paper in my spare time, and I had no spare time for the past few days. Also, quite frankly, I didn't know if your problem had been solved already or not.

    Did the bioperl suggestions lead anywhere for you?

    I'll resume reading the paper tomorrow. If you have any further reading material that might be helpful, please let me know. I can be reached more directly at jgamble@cpan.org.

      No Sir, Its not solved yet. Actually as previously wrote its the implementation of Alfred Aho's algorithm so as to construct a phylogenetic tree.The algorithm is there in section 7.2.3 of the paper. Sir thats the only material/paper Im following right now.

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