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Hey anonymous,

I could be way off base here, but it almost sounds like you want an array of counters, where each element of the array represents the position of the line you're counting. Something along the order of (untested):

if ($split_seq_to_examine[$j] eq 'A') {$count_A[$j]++;} elsif ($split_seq_to_examine[$j] eq 'T') {$count_T[$j]++;} elsif ($split_seq_to_examine[$j] eq 'C') {$count_C[$j]++;} elsif ($split_seq_to_examine[$j] eq 'G') {$count_G[$j]++;} elsif ($split_seq_to_examine[$j] eq '-') {$count_non[$j]++;}

To find out what you have in, say, position 56, look at $count_A[56], $count_T[56], $count_G[56], and $count_C[56].


In reply to Re: What is wrong in this code??? by brap
in thread What is wrong in this code??? by Anonymous Monk

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    [ambrus]: was this bug: https://rt.cpan. org/Public/Bug/ Display.html?id= 59814
    [Corion]: ambrus: Oh - that one would be much harder to automate... The SYNOPSIS section should mostly be a runnable program IMO, but I write only small snippets in my documentation for single functions/methods, and creating the appropriate environment for ...
    [Corion]: ... those in an automated fashion seems somewhat hard to me. Although it should do wonders for the test coverage ;)
    [haukex]: Corion: I once wrote an automated thingy for that here
    [haukex]: here's the code that uses it
    [Corion]: haukex: Hmm - maybe I can reuse that. I see that it uses Pod::Parser, which I think was one of the more fragile parsers. But if I'm statically (re)generating the tests instead of doing that "live" on the client/tester machines, that's a much smaller...
    [Corion]: ... problem space than trying to cater to all versions of Pod::Parser(s)

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