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Hmmm. The strange thing is I actually had a 'rewind' in there at some point but removed it again because it didn't have any impact. However if I change the first copy operation to
copy $src_file, $tmp1_fh or die "$ERRNO\n"; seek $tmp1_fh,0,0;
then it magically works now. Thanks for the tip! Maybe there is some other bug lurking in the original program, but now that the basic copy works I'm sure to figure it out.

In reply to Re^2: 'Anonymous' copy via file handle fails by Monk::Thomas
in thread 'Anonymous' copy via file handle fails by Monk::Thomas

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