Try dumping your $conf object just to be sure the problem isn't on that side (I really don't think so). You could also try making list context even more explicit with :
my (%config,) = ($conf->getall,); # Now that's overdoing it and see if it changes anything.
If you can't get any further, try to reduce your program as much as possible until you reach the minimum conditions to reproduce the defect. And tell us on which versions of Perl you work in both cases
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