Couple of things from the top of my head:
M-x rgrep recursive grep. Very useful for coding in general.
M-x compile also works for perl programs, with error file/line navigation, like rgrep.
Sepia is pretty cool.
Version control: psvn (M-x svn-status) is good for SVN. GIT's own git.el is OK, but there might be something better.
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