I think you need to split each line into an array and pass the array reference to print into the out file.
my $csv = Text::CSV->new ({ binary => 1, eol => "\n" });
open(my $out,">>",$outfile);
open (CSV, "<", $file) or die $!;
while(<CSV>)
{
my @array=split /\s+/;
$csv->print($out,\@array);
}
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