In relation to my other question (the one with redirecting STDERR), I would like to ask this: what if the command outputs a file? How can I store the data using Perl? Will doing this:
@output = `/home/.../samtools view...`
be enough? Or am I missing something? Using the console, I am able to do this by doing:
/home/.../samtools view ... > output.bam
I hope I was able to deliver this clearly. Thanks in advance for any help!
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