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search in SMART

by sdbiology (Initiate)
on Nov 26, 2013 at 08:39 UTC ( #1064366=perlquestion: print w/replies, xml ) Need Help??

sdbiology has asked for the wisdom of the Perl Monks concerning the following question:

Thank you for your help! I want to search a lot of protein sequences in "http://smart.embl-heidelberg.de/" by sequence SMART program and get the results. If search one and one with hand in the web,it will be a long time,so I want to perl to do this. Thank you! Thank you karlgoethebier!

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Re: search in SMART
by einhverfr (Friar) on Nov 26, 2013 at 09:58 UTC

    I took a look at the site, and it looks like SMART is a tool for searching for gene and protein sequences? Looks like a fascinating topic.

    But I am unclear what your question is. Are you having trouble with SMART software? Are you trying to extend it with your own programming skills? Do you have API specifications? What have you tried?

Re: search in SMART
by jesuashok (Curate) on Nov 26, 2013 at 09:09 UTC
    I am trying to help but it is being a bit difficult to understand what you mean by SMART here. Can you provide a bit more information on your requirement?

    Would you like to search your pattern in the web page given using protein sequence and with the help of SMART applied?

    Anyways, I will wait for others comment to see if anyone got more input from your query.

Re: search in SMART
by karlgoethebier (Monsignor) on Nov 26, 2013 at 13:59 UTC

    OK, i guess too. But i searched a little bit and found SMART_batch.pl. Perhaps that is what you are looking for?

    Regards, Karl

    «The Crux of the Biscuit is the Apostrophe»

Re: search in SMART (mechanize)
by Anonymous Monk on Nov 26, 2013 at 09:17 UTC

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