Re^2: Adding missing values into a hash

[Biopolete]

Thank you very much for your answer :)

Your answer seems quite interesting but I don't know why but I obtain too many "NA".

With de first part of the script I obtain for example

AA=> NA, NA,1,2,5,NA,NA,NA,NA,NA

instead of

AA=> 1,2,5

Perhaps is related with

my (undef,%hash) = split /[\t;=]/,$line;

because you are spliting 3 times, I don't know.

The final csv is

AA => NA,NA,NA

AB => NA,NA,NA

AC => NA,NA,NA

Perhaps is because the problem with de "NA".

[poj]

Do you have other lines in the file apart from those like
##INFO=<ID=AA, and 1 AA=1;AB=2;AC=3 ? Blank lines for example.

poj

[Biopolete]

No, I don't have any other lines in the file :(

I have the same problem if I use your complete script with:

__DATA__

##INFO=<ID=AA,

##INFO=<ID=AB,

##INFO=<ID=AC,

1 AA=1;AB=2;AC=3

2 AA=2;AB=2

3 AA=5;AB=1;AC=1

I only obtain "NA" values in CVS file

[poj]

Check you have a tab character between between 1 and AA=1, 2 and AA=2, 3 and AA=5, not spaces

poj