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Re: parsing BLAST output

by mrbbking (Hermit)
on May 31, 2002 at 12:34 UTC ( #170684=note: print w/replies, xml ) Need Help??


in reply to parsing BLAST output

Where in the BLAST output do you find the Gene? I don't see '[Gg]ene' anywhere in the sample you posted (and I'm not sure what else to look for...)

As for the Query:

Query: 363 KRSFYQELPLLLWFLLLGTVLSACSKVESTKSVHPVKSFKSDLKSLLKETIKQDIDLSK +T 184 K+ F FLL GT+LSAC+ +++ DL++L+KET +DIDLSK
- where does it end? Is it both lines, or just the first? Is the three-digit number included?

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