I've got a foot in both camps, and I say that your application plus its dependencies (perl itself is a dependency) should be built as debs, which you store in your own corporate repository, which have minimal dependencies on Debian's own packages, and which install in somewhere like /opt/companyname/...
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Snippets of code should be wrapped in
<code> tags not
<pre> tags. In fact, <pre>
tags should generally be avoided. If they must
be used, extreme care should be
taken to ensure that their contents do not
have long lines (<70 chars), in order to prevent
horizontal scrolling (and possible janitor
intervention).
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