Beefy Boxes and Bandwidth Generously Provided by pair Networks
No such thing as a small change
 
PerlMonks  

comment on

( #3333=superdoc: print w/replies, xml ) Need Help??
Thanks guys for all the code...it will take some time go through it all...being a bit of a newbie and all
The answer to your last question tfrayner is that I would like to have a minimum of 3 residues that match...hopefully more of course

I was avoiding these more biological type details so that they would not confuse the issue for some.

You basically have it right...imagine the user desiring to take his/her "motif" (lets say 10 a.a.) and searching it against one or more protein sequences. The program must match any part, and as much of, the initial input as possible to the protein sequence(s). All cases where there is any type of a match must be printed out.
Hope this clarifies more of what I am trying to do. I notice that you are a post doc...cool...I am part of a research team at the Clinical Genomics Centre in Toronto, Canada.

Thanks again for your help, it is greatly appreciated!
dr_jgbn

In reply to Re: Re: Progressive pattern matching by Anonymous Monk
in thread Progressive pattern matching by Anonymous Monk

Title:
Use:  <p> text here (a paragraph) </p>
and:  <code> code here </code>
to format your post; it's "PerlMonks-approved HTML":



  • Posts are HTML formatted. Put <p> </p> tags around your paragraphs. Put <code> </code> tags around your code and data!
  • Titles consisting of a single word are discouraged, and in most cases are disallowed outright.
  • Read Where should I post X? if you're not absolutely sure you're posting in the right place.
  • Please read these before you post! —
  • Posts may use any of the Perl Monks Approved HTML tags:
    a, abbr, b, big, blockquote, br, caption, center, col, colgroup, dd, del, div, dl, dt, em, font, h1, h2, h3, h4, h5, h6, hr, i, ins, li, ol, p, pre, readmore, small, span, spoiler, strike, strong, sub, sup, table, tbody, td, tfoot, th, thead, tr, tt, u, ul, wbr
  • You may need to use entities for some characters, as follows. (Exception: Within code tags, you can put the characters literally.)
            For:     Use:
    & &amp;
    < &lt;
    > &gt;
    [ &#91;
    ] &#93;
  • Link using PerlMonks shortcuts! What shortcuts can I use for linking?
  • See Writeup Formatting Tips and other pages linked from there for more info.
  • Log In?
    Username:
    Password:

    What's my password?
    Create A New User
    Chatterbox?
    and the web crawler heard nothing...

    How do I use this? | Other CB clients
    Other Users?
    Others exploiting the Monastery: (8)
    As of 2020-05-25 14:58 GMT
    Sections?
    Information?
    Find Nodes?
    Leftovers?
      Voting Booth?
      If programming languages were movie genres, Perl would be:















      Results (146 votes). Check out past polls.

      Notices?