Never "give up". Try this for your put Re: Net:FTP Not overwrite files. It uses Net::FTP::File.
Update: I've been working on this example for a while now. The put cmd isn't allowed, so I used get. Added Filter::cpp
#!/usr/bin/perl
use strict;
use warnings;
use Net::FTP;
use Filter::cpp;
use constant HOST => 'ftp.perl.org';
use constant DIR => '/pub/CPAN';
use constant REMOTE_FILE => 'README';
my $ftp = Net::FTP->new(HOST, Debug => 1, Passive => 1) or die "Couldn
+'t connect: $@\n";
$ftp->login('anonymous');
$ftp->cwd(DIR);
$ftp->ascii();
$ftp->pwd();
#define DEBUG
my $x = 'log_level';
my $log_level;
#ifdef DEBUG
$log_level = 1;
#else
$log_level = 3;
#endif
($log_level <= 3) and print "$log_level <= 3: \$x is \"$x\"\n";
$ftp->get(REMOTE_FILE) unless $log_level == 3;
print "Done\n" unless $log_level == 3;
$ftp->quit;
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