Hi Graff one more thing about the result file being produced the number of lines having Gm10 assembly in Methylation.gtf are 26637 and thus the final result should have the same number with 0 value for those genes which have no CG CHG or CHH count while right now it only prints 8626 lines including the header. Sorry to trouble you about that but if you can let me know what changes should I make in the code to make it possible
Thanks again
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