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similar string matching

by Anonymous Monk
on Jul 05, 2004 at 07:25 UTC ( #371799=perlquestion: print w/replies, xml ) Need Help??

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  1. or download this
    MAAGAAAAFAAAATTTTTTTTFTTTTTTTTTTTTAAAAEAAAARAAAAAA # 1. sequence
                 TTTTTTTTFTTTTTTTTTTTT                 # 2. sequence
    result is: 2. lies at position 14 to 34 in 1.
    
  2. or download this
    SUBSTITUTION
    AAAAEAAAARGAAATTTTFTTTTTTTTTTTTTTTTAAAAAAAAILVAAAAAAAA # 1. sequence
    ...
    PERFECT MATCHING ONLY AT BEGIN AND END OF 2. SEQUENCE
    AAAAAAAAAAATTTTTTTTGGGGGGGGGGGGGGGGGGGGGTTTTTTTTTAAAAAAA # 1.sequence
               TTTTTTTTGGGNNGGGEEGGGEGGGGGGTTTTTTTTT    # 2. Sequence
    

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