|There's more than one way to do things|
Re^2: Lower-casing Substrings and Iterating Two Files togetherby neversaint (Deacon)
|on Dec 29, 2008 at 05:32 UTC||Need Help??|
Your magical approach is at least 6980x faster than mine!
BrowserUk Perl's approach (modified to handle FASTA):
Takes only this much time:
This is tested on 12MB dataset, and the breakdown of sequence length is this:
Update: These test datasets (full and hardmasked) can be downloaded here.
neversaint and everlastingly indebted.......