using R from Perl

renovatio66 has asked for the wisdom of the Perl Monks concerning the following question:

Replies are listed 'Best First'.
Re: using R from Perl by marto (Cardinal) on Aug 05, 2010 at 14:22 UTC
Welcome to the Monastery, Super Search returns Calling R script from Perl and Scientific Graphing, R and Perl among others on this subject. Update: Perl and Bioinformatics may also be of interest to you.	[reply]
Re^2: using R from Perl by MidLifeXis (Monsignor) on Aug 05, 2010 at 14:42 UTC
Would BioPerl also be useful? --MidLifeXis	[reply]
Re^3: using R from Perl by marto (Cardinal) on Aug 05, 2010 at 14:46 UTC
I think this is covered in Perl and Bioinformatics which I suggested since they are a biology student. It may or may not be helpful :)	[reply]
Re^3: using R from Perl by renovatio66 (Initiate) on Aug 06, 2010 at 10:44 UTC
Sorry as I told you, I can not install anything and i dont have bioperl/RSperl/statistics::R. is there a way to do it then?	[reply]
Re^4: using R from Perl by BrowserUk (Patriarch) on Aug 06, 2010 at 11:10 UTC
Re: using R from Perl by lima1 (Curate) on Aug 05, 2010 at 14:22 UTC
Have you tried RSPerl? I used it about 2-3 years ago and it worked.	[reply]
Re^2: using R from Perl by renovatio66 (Initiate) on Aug 05, 2010 at 15:31 UTC
i can not install RSPerl as I don't have the admin rights. Is there any other way? to call R script through perl command line and getting the result.	[reply]
Re^3: using R from Perl by BrowserUk (Patriarch) on Aug 05, 2010 at 15:37 UTC
Have you seen Statistics::R?	[reply]
Re^4: using R from Perl by renovatio66 (Initiate) on Aug 05, 2010 at 17:37 UTC
Re^5: using R from Perl by graff (Chancellor) on Aug 06, 2010 at 02:26 UTC
Re^5: using R from Perl by BrowserUk (Patriarch) on Aug 05, 2010 at 17:50 UTC
Re^5: using R from Perl by jedikaiti (Hermit) on Aug 05, 2010 at 17:48 UTC
Re^3: using R from Perl by lima1 (Curate) on Aug 05, 2010 at 19:05 UTC
I'd be pretty surprised if you can't install RSPerl in your home. I'm quite sure I did... Just RTM.	[reply]
Re: using R from Perl by erix (Prior) on Aug 06, 2010 at 12:03 UTC
Here is another PM thread (which shows a basic approach): Passing parameters to R script	[reply]
Re: using R from Perl by MidLifeXis (Monsignor) on Aug 06, 2010 at 13:25 UTC
Also see system, fork, exec, and Yes, even you can use CPAN. Also, have you tried anything yourself? If so, can you share? What have you tried? Perhaps there is something obvious in your approach that some fellow monk may help you to see. --MidLifeXis	[reply]


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