Re^2: string manipulation with Regex

[FluffyBunny]

Thanks bluecompassrose for your help... (also thank you for posting the bwa file input for me - you wrote 'output' instead) but I am not sure if it is efficient for millions of sequences (basically >2GB of text files).. Any efficient ideas? please let me know.

[bluecompassrose]

Haha, yup. I'm terrible at perl. Java programmer at heart =P. That said, take a look at Marshall's code and my comment above, it should work for what you want it to do o.ob