Re^2: Adding a particular column from one file to a second file

Excellent!! what a useful thing to know. Ok this is probably a dumb question but why is it telling me

join  -t '\t' -a1 -1 16 -2 2  PTCL_All.txt Cosmic_Counts_By_Gene.txt 
join: illegal tab character specification
<\code>

or 
<code>join  -t '<tab>' -a1 -1 16 -2 2   PTCL_All.txt Cosmic_Counts_By_
+Gene.txt 
join: illegal tab character specification
[download]

Isn't -t ' CHAR' the correct format for specifying the delimiter in the output? Also if I use join -t ',' -a1 -1 16 -2 2 PTCL_All.txt Cosmic_Counts_By_Gene.txt The output seems to be much more different than just a comma delimeter being added to the command join -a1 -1 16 -2 2 PTCL_All.txt Cosmic_Counts_By_Gene.txt Am I doing this correctly? the latter just looks like what I want with spaces separating the columns( the same number of lines as file 1), while the former seems to create a million repeats of each line (many many many more lines than what is in either file).

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Re^3: Adding a particular column from one file to a second file by ZWcarp (Beadle) on Jul 15, 2011 at 17:13 UTC
I think this works though.... `join -a1 -1 16 -2 2 PTCL_All.txt Cosmic_Counts_By_Gene.txt \|perl -pe 's/ /\t/g'`	[reply] [d/l]


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