Beefy Boxes and Bandwidth Generously Provided by pair Networks
We don't bite newbies here... much

Comment on

( #3333=superdoc: print w/replies, xml ) Need Help??

OK, I think a couple changes will fix everything.

First, the method for running a line of R code is run(), not send(), so change $R->send(...) to $R->run(...). (The method send() still works, but seems to have been deprecated for a long time. I'd avoid its use in case it is ever completely dropped.)

Second, to retrieve values from R, you need to change my @results1 = get('g1'); to my $results = $R->get('g1'). Notice that there are two changes here: (1) the addition of $R-> and (2) $results is an array reference rather than an array.

Regarding your problem with $R->set(), can you show a few lines of code where you are using it in context? I don't see any obvious problems with what you wrote there.

One more thing: you are putting your R commands in single quotes, but the Statistics::R docs recommend quoting with q`...` (if you aren't interpolating Perl variables) or qq`...` (if you are interpolating). Those are backticks, by the way (but, really, any character not used in typical R code should suffice). The reason for this is that if you have single or double quotes in your R commands, you won't run into troubles. Another thing to watch out for is if you are wrapping your R code in double quotes because you need to interpolate Perl variables and are using $ in your R code to specify a column of data, for example, you need to escape it (e.g., dataframe\$sample1).

EDIT: I'm trying to understand why you are having issues with $R->set(). Are you able to run the following code successfully? Also, I don't think it is causing any errors, but you should remove the spaces between your objects and methods (e.g., change $R -> set(...) to $R->set(...))

#!/usr/bin/env perl use strict; use warnings; use Statistics::R; my @numbers = ( 1 .. 10 ); my $R = Statistics::R->new(); $R->set( 'x', \@numbers ); $R->run( q`x = x ^ 2` ); my $squares = $R->get('x'); print "@$squares"; __END__ 1 4 9 16 25 36 49 64 81 100

In reply to Re^3: Calling R in perl by frozenwithjoy
in thread Calling R in perl by blackzero

Use:  <p> text here (a paragraph) </p>
and:  <code> code here </code>
to format your post; it's "PerlMonks-approved HTML":

  • Posts are HTML formatted. Put <p> </p> tags around your paragraphs. Put <code> </code> tags around your code and data!
  • Titles consisting of a single word are discouraged, and in most cases are disallowed outright.
  • Read Where should I post X? if you're not absolutely sure you're posting in the right place.
  • Please read these before you post! —
  • Posts may use any of the Perl Monks Approved HTML tags:
    a, abbr, b, big, blockquote, br, caption, center, col, colgroup, dd, del, div, dl, dt, em, font, h1, h2, h3, h4, h5, h6, hr, i, ins, li, ol, p, pre, readmore, small, span, spoiler, strike, strong, sub, sup, table, tbody, td, tfoot, th, thead, tr, tt, u, ul, wbr
  • You may need to use entities for some characters, as follows. (Exception: Within code tags, you can put the characters literally.)
            For:     Use:
    & &amp;
    < &lt;
    > &gt;
    [ &#91;
    ] &#93;
  • Link using PerlMonks shortcuts! What shortcuts can I use for linking?
  • See Writeup Formatting Tips and other pages linked from there for more info.
  • Log In?

    What's my password?
    Create A New User
    and the web crawler heard nothing...

    How do I use this? | Other CB clients
    Other Users?
    Others exploiting the Monastery: (3)
    As of 2018-09-24 01:52 GMT
    Find Nodes?
      Voting Booth?
      Eventually, "covfefe" will come to mean:

      Results (191 votes). Check out past polls.

      • (Sep 10, 2018 at 22:53 UTC) Welcome new users!