Depending on the size and scope of your application, a framework like Dancer or Catalyst may be useful for bolting all the bits together. There are a *lot* of websites out there that don't use those icky WYSIWYG-generated pages to do the work.
I'm fond of Dancer, and have used it for a number of little things--there are plugins for database access, and you've got some choices in the web templating, as well.
There Is More Than One Way To Do It; experiment, ask questions, and find the one that works for your style and your application.
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