We've been using Devel::NYTProf::Apache for analysing the main application, so I can have a go at that.
In the meantime I stripped out everything except the lines:
my $r = shift;
$r->content_type('text/plain');
$r->print("Errors: $err\n");
return Apache2::Const::OK;
And it was still giving 1700ms per request - suggesting that its not the DB access at all...
The SELECT difference was a cut and paste error, the scripts on the server do both have the WHERE clause.
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