in reply to Analysing a (binary) string. (Solved)
This wasn't a bio problem, but... could someone that knows bioperl/DNA sequencing comment on the possibility of this methodology?
- Chop up the long binary string into substrings
- Encode the bytes as DNA base pairs
- Use existing alignment implementations for DNA sequences
You'd probably want to do that with different size substrings, of course. (And yeah, this would be using a screwdriver as a saw, or something.)
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