I am not willing to discuss the details on a public forum, especially because my work is unpublished


I probably wouldn't understand the hardcore genomics anyway :)

But ... if you could isolate the differences in non-genomic terms. Eg. The results are more random; or less random; or way too random?

Or if you are want to discuss it off-line ...

I am posting about here in this threads, is related to our previous discussion thread on shuffling DNA and using that to estimate False Discovery Rates of a certain type of "feature" in the genome

I thought the processing was familiar :)

One question. Why are you shuffling the data 10 times? Is this your innovation; or part of some procedure described somewhere that you are following?

The reason I ask is: it shouldn't be necessary. Actually, I'll re-state that. It isn't necessary!

The whole point about the Fischer-Yates shuffle is that every possible reordering of the data is possible; and they all have equal probability.

Thus; by shuffling multiple times all you are doing is choosing a different mix. Not a better one; nor a more random one; just a different one.

And that could just as equally be achieved by seeding the PRNG differently: srand( time * rand() ) or similar.

But as all outcomes are possible from every shuffle -- including the first one -- doing multiple shuffles is just wasting time; nothing more.

With the rise and rise of 'Social' network sites: 'Computers are making people easier to use everyday'
Examine what is said, not who speaks -- Silence betokens consent -- Love the truth but pardon error.
"Science is about questioning the status quo. Questioning authority".
In the absence of evidence, opinion is indistinguishable from prejudice.
I'm with torvalds on this Agile (and TDD) debunked I told'em LLVM was the way to go. But did they listen!

In reply to Re^3: Random shuffling by BrowserUk
in thread Random shuffling by onlyIDleft

Use:  <p> text here (a paragraph) </p>
and:  <code> code here </code>
to format your post; it's "PerlMonks-approved HTML":

  • Posts are HTML formatted. Put <p> </p> tags around your paragraphs. Put <code> </code> tags around your code and data!
  • Titles consisting of a single word are discouraged, and in most cases are disallowed outright.
  • Read Where should I post X? if you're not absolutely sure you're posting in the right place.
  • Please read these before you post! —
  • Posts may use any of the Perl Monks Approved HTML tags:
    a, abbr, b, big, blockquote, br, caption, center, col, colgroup, dd, del, div, dl, dt, em, font, h1, h2, h3, h4, h5, h6, hr, i, ins, li, ol, p, pre, readmore, small, span, spoiler, strike, strong, sub, sup, table, tbody, td, tfoot, th, thead, tr, tt, u, ul, wbr
  • You may need to use entities for some characters, as follows. (Exception: Within code tags, you can put the characters literally.)
            For:     Use:
    & &amp;
    < &lt;
    > &gt;
    [ &#91;
    ] &#93;
  • Link using PerlMonks shortcuts! What shortcuts can I use for linking?
  • See Writeup Formatting Tips and other pages linked from there for more info.