Re^2: Storage of proteins from diferent ORF

[frozenwithjoy]

I had to do some translation from DNA/RNA to amino acids and grabbed this codon table. I found, however, that there are a couple missing amino acids and one or two mistakes. Just want to drop a fixed version here in case people come looking in the future:

my %codon_table = (
    AAA => 'K',
    AAC => 'N',
    AAG => 'K',
    AAT => 'N',
    ACA => 'T',
    ACC => 'T',
    ACG => 'T',
    ACT => 'T',
    AGA => 'R',
    AGC => 'S',
    AGG => 'R',
    AGT => 'S',
    ATA => 'I',
    ATC => 'I',
    ATG => 'M',
    ATT => 'I',
    CAA => 'Q',
    CAC => 'H',
    CAG => 'Q',
    CAT => 'H',
    CCA => 'P',
    CCC => 'P',
    CCG => 'P',
    CCT => 'P',
    CGA => 'R',
    CGC => 'R',
    CGG => 'R',
    CGT => 'R',
    CTA => 'L',
    CTC => 'L',
    CTG => 'L',
    CTT => 'L',
    GAA => 'E',
    GAC => 'D',
    GAG => 'E',
    GAT => 'D',
    GCA => 'A',
    GCC => 'A',
    GCG => 'A',
    GCT => 'A',
    GGA => 'G',
    GGC => 'G',
    GGG => 'G',
    GGT => 'G',
    GTA => 'V',
    GTC => 'V',
    GTG => 'V',
    GTT => 'V',
    TAA => '-',
    TAC => 'Y',
    TAG => '-',
    TAT => 'Y',
    TCA => 'S',
    TCC => 'S',
    TCG => 'S',
    TCT => 'S',
    TGA => '-',
    TGC => 'C',
    TGG => 'W',
    TGT => 'C',
    TTA => 'L',
    TTC => 'F',
    TTG => 'L',
    TTT => 'F',
);

EDIT: Here is one I made that I like more. It is structured like you normally see codon tables in books.

my %codon_table = (
    TTT => 'F', TCT => 'S', TAT => 'Y', TGT => 'C',
    TTC => 'F', TCC => 'S', TAC => 'Y', TGC => 'C',
    TTA => 'L', TCA => 'S', TAA => '-', TGA => '-',
    TTG => 'L', TCG => 'S', TAG => '-', TGG => 'W',
    CTT => 'L', CCT => 'P', CAT => 'H', CGT => 'R',
    CTC => 'L', CCC => 'P', CAC => 'H', CGC => 'R',
    CTA => 'L', CCA => 'P', CAA => 'Q', CGA => 'R',
    CTG => 'L', CCG => 'P', CAG => 'Q', CGG => 'R',
    ATT => 'I', ACT => 'T', AAT => 'N', AGT => 'S',
    ATC => 'I', ACC => 'T', AAC => 'N', AGC => 'S',
    ATA => 'I', ACA => 'T', AAA => 'K', AGA => 'R',
    ATG => 'M', ACG => 'T', AAG => 'K', AGG => 'R',
    GTT => 'V', GCT => 'A', GAT => 'D', GGT => 'G',
    GTC => 'V', GCC => 'A', GAC => 'D', GGC => 'G',
    GTA => 'V', GCA => 'A', GAA => 'E', GGA => 'G',
    GTG => 'V', GCG => 'A', GAG => 'E', GGG => 'G',
);